My husband and I went through something similar with our baby. He was quite regular then became quite unregular after a he was a month or so old.
The changes in her digestion system probably have more to do with her intestines growing longer (and taking more time to digest food) and less to do with an actual problem with her anus.
We had to do rectal stimulation (what parents have done for decades for this problem we learned from my husbands mother) on our son for a few months before our son became regular again on his own. We'd let him go for about 36 hours and do the rectal stimulation and he'd usually poop in a few hours.
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